From: In silico analysis of the wild-type and mutant-type of BRCA2 gene
Hydrophobic Interactions | |||||||
---|---|---|---|---|---|---|---|
Index | Residue | AA | Distance | Ligand Atom | Protein Atom | Â | Â |
1 | 3017Â A | LYS | 3.96 | 12,454 | 8881 | Â | Â |
Hydrogen Bonds | |||||||
Index | Residue | AA | Distance H-A | Distance D-A | Donor Angle | Donor Atom | Acceptor Atom |
1 | 2988Â A | SER | 2.09 | 3.05 | 170.60 | 12,491 [O3] | 8576 [O3] |
2 | 3017Â A | LYS | 2.42 | 3.37 | 152.05 | 8883 [N3+] | 12,444 [O2] |
3 | 3017Â A | LYS | 2.71 | 3.61 | 154.02 | 12,430 [O3] | 8888 [O2] |
4 | 3018Â A | SER | 1.86 | 2.78 | 157.67 | 8893 [O3] | 12,429 [O2] |
5 | 3019Â A | LYS | 2.55 | 3.47 | 154.63 | 8897 [Nam] | 12,430 [O3] |
6 | 3026Â A | GLN | 1.95 | 2.89 | 158.98 | 8978 [Nam] | 12,462 [O3] |
7 | 3026Â A | GLN | 2.43 | 3.33 | 153.67 | 12,462 [O3] | 8977 [O2] |
8 | 3084Â A | LYS | 2.83 | 3.67 | 138.37 | 9544 [N3+] | 12,316 [O2] |
9 | 3106Â A | TRP | 2.05 | 3.03 | 170.40 | 9754 [Nar] | 12,373 [O3] |
Ï€-Cation Interactions | |||||||
Index | Residue | AA | Distance | Offset | Ligand Group | Ligand Atoms | Â |
1 | 3017Â A | LYS | 3.76 | 1.51 | Aromatic | 12,472, 12,473, 12,475, 12,477, 12,479, 12,481 | Â |
Salt Bridges | |||||||
Index | Residue | AA | Distance | Ligand Group | Ligand Atoms | Â | Â |
1 | 2971Â A | LYS | 3.61 | Phosphate | 12,460, 12,460, 12,459, 12,461, 12,462, 12,463 | Â | Â |
2 | 3104Â A | LYS | 4.09 | Phosphate | 12,364, 12,364, 12,363, 12,365, 12,366, 12,367 | Â | Â |
3 | 3132Â A | LYS | 4.34 | Phosphate | 12,332, 12,332, 12,331, 12,333, 12,334, 12,335 | Â | Â |